Package: ClusTorus 0.2.4
ClusTorus: Prediction and Clustering on the Torus by Conformal Prediction
Provides various tools of for clustering multivariate angular data on the torus. The package provides angular adaptations of usual clustering methods such as the k-means clustering, pairwise angular distances, which can be used as an input for distance-based clustering algorithms, and implements clustering based on the conformal prediction framework. Options for the conformal scores include scores based on a kernel density estimate, multivariate von Mises mixtures, and naive k-means clusters. Moreover, the package provides some basic data handling tools for angular data.
Authors:
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ClusTorus.pdf |ClusTorus.html✨
ClusTorus/json (API)
# Install 'ClusTorus' in R: |
install.packages('ClusTorus', repos = c('https://sungkyujung.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sungkyujung/clustorus/issues
- ILE - ILE: Structure of the Isoleucine
- SARS_CoV_2 - SARS-CoV-2: chain B of Structure of the SARS-CoV-2 spike glycoprotein
- data_6VXX - 6VXX: Structure of the SARS-CoV-2 spike glycoprotein
- toydata1 - Toydata1: Labelled Data for 5 Clusters
- toydata2 - Toydata2: Labelled Data for 3 Clusters
Last updated 3 years agofrom:617d57a6b9. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win | NOTE | Nov 09 2024 |
R-4.5-linux | NOTE | Nov 09 2024 |
R-4.4-win | NOTE | Nov 09 2024 |
R-4.4-mac | NOTE | Nov 09 2024 |
R-4.3-win | NOTE | Nov 09 2024 |
R-4.3-mac | NOTE | Nov 09 2024 |
Exports:ang.distang.minusang.pdistclus.toruscluster.assign.toruscp.torus.kdeellip.kmeans.torusEMsinvMmixgrid.torushyperparam.alphahyperparam.Jhyperparam.torusicp.torusicp.torus.evalkde.toruskmeans.toruson.torustor.minuswtd.stat.ang
Dependencies:abindbackportsBAMBIbridgesamplingBrobdingnagcheckmateclicodacodetoolscolorspacecombinatcowplotcpp11digestdistributionalfansifarverfuturefuture.applygenericsggplot2globalsgluegtablegtoolsigraphisobandlabel.switchinglabelinglatticelifecyclelistenvloolpSolvemagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnlmenumDerivparallellypillarpkgconfigposteriorpurrrqrngR6RColorBrewerRcppRcppArmadillorlangscalesstringistringrtensorAtibbleutf8vctrsviridisLitewithr